BONIZZONI PAOLA

Role
Full Professor  
Academic disciplines
Informatics (INFO-01/A)
Scientific-Disciplinary Group:
INFORMATICS (01/INFO-01)
Office phone
Room:
  • U14, Floor: 2, Room: 2040

Publications

  • Bonizzoni, P., Cozzi, D., Gao, Y. (2026). Optimal-Time Mapping in Run-Length Compressed PBWT. In 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026) (pp.1-18). Detail

  • Bonizzoni, P., Gao, Y., Riccardi, B. (2026). Constructing Suffixient Arrays Revisited. In 37th Annual Symposium on Combinatorial Pattern Matching (CPM 2026) (pp.1-18) [10.4230/lipics.cpm.2026.30]. Detail

  • Epain, V., Mane, A., Vedova, G., Bonizzoni, P., Chauve, C. (2026). A Multi-flow Approach for Binning Circular Plasmids from Short-Reads Assembly Graphs. In Comparative Genomics 23rd RECOMB International Workshop, RECOMB-CG 2026, Thessaloniki, Greece, May 24–25, 2026, Proceedings (pp.91-105). Springer Science and Business Media Deutschland GmbH [10.1007/978-3-032-26891-4_5]. Detail

  • Masri, O., Pirola, Y., Borghi, C., Bonizzoni, P., Rizzi, R. (2025). Minimizer Sketches of Lyndon-Fingerprints: A Novel Approach to Compute Overlaps Among Long Reads. In 2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (pp.610-613). IEEE Computer Society [10.1109/bibm66473.2025.11356736]. Detail

  • Cozzi, D., Bonizzoni, P., Boucher, C., Langmead, B., Pirola, Y. (2025). Phasing Data from Genotype Queries via the µ-PBWT. In The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing [10.4230/OASIcs.Manzini.10]. Detail

Research projects

Forgenom
Year: 2022
Call: FAQC 2022 - seconda finestra
Grantors: Università degli Studi di MILANO-BICOCCA
PNRR per la Missione 4, componente 2 Investimento 1.1- Avviso 104/2022 | PINC, Pangenome INformatiCs: from Theory to Applications
Year: 2022
Call: Bando PRIN 2022
Grantors: MINISTERO DELL'UNIVERSITA' E DELLA RICERCA (MUR)
ALPACA-ALgorithms for PAngenome Computational Analysis
Year: 2020
Call: Innovative Training Networks
Grantors: EUROPEAN COMMISSION
PANGAIA - Pan-genome Graph Algorithms and Data Integration
Year: 2019
Call: Research and Innovation Staff Exchange
Grantors: EUROPEAN COMMISSION
Modulation of anti-cancer immune response by regulatory non-coding RNAs
Year: 2013
Call: 2013-007 - Ricerca Scientifica in ambito biomedico, Ricerca scientifica in ambito biomedico
Grantors: FONDAZIONE CARIPLO

Awards

Editorial boards

  • - THEORY AND APPLICATIONS OF COMPUTABILITY, 2010

Research and teaching assignments

  • Visiting Researcher - ricercatore - University of Colorado Boulder, 1994
  • Visiting Researcher - ricercatore - University of Colorado Boulder, 1991 - 1992
  • Visiting Researcher - ricercatore - University of California at Davis, 1998
  • Visiting Researcher - ricercatore - McMaster University, 1997

Congresses/Conferences

  • Program chair - CiE2013. The Nature of Computation, 2013