BONIZZONI PAOLA

Role
Full Professor  
Academic disciplines
Informatics (INFO-01/A)
Scientific-Disciplinary Group:
INFORMATICS (01/INFO-01)
Office phone
Room:
  • U14, Floor: 2, Room: 2040

Publications

  • Cozzi, D., Riccardi, B., Denti, L., Ciccolella, S., Sadakane, K., Bonizzoni, P. (2025). Pangenome Graph Indexing via the Multidollar-BWT. In Leibniz International Proceedings in Informatics, LIPIcs. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing [10.4230/LIPIcs.SEA.2025.13]. Detail

  • Cozzi, D., Bonizzoni, P., Boucher, C., Langmead, B., Pirola, Y. (2025). Phasing Data from Genotype Queries via the µ-PBWT. In The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing [10.4230/OASIcs.Manzini.10]. Detail

  • Bonizzoni, P., Della Vedova, G., Soto Gomez, M., Trucco, G. (2025). On recognizing graphs representing persistent perfect phylogenies. NATURAL COMPUTING, 24(3), 781-795 [10.1007/s11047-025-10039-4]. Detail

  • Ciccolella, S., Denti, L., Avila Cartes, J., Della Vedova, G., Pirola, Y., Rizzi, R., et al. (2025). Differential analysis of alternative splicing events in gene regions using residual neural networks. NEURAL COMPUTING & APPLICATIONS, 37(9), 6819-6829 [10.1007/s00521-025-10992-2]. Detail

  • Bonizzoni, P., De Felice, C., Pirola, Y., Rizzi, R., Zaccagnino, R., Zizza, R. (2025). Identification of Chimeric RNAs: A Novel Machine Learning Perspective. In Computational Advances in Bio and Medical Sciences 12th International Conference, ICCABS 2023, Norman, OK, USA, December 11–13, 2023, Revised Selected Papers (pp.14-26). Springer Science and Business Media Deutschland GmbH [10.1007/978-3-031-82768-6_2]. Detail

Research projects

Forgenom
Year: 2022
Call: FAQC 2022 - seconda finestra
Grantors: Università degli Studi di MILANO-BICOCCA
PNRR per la Missione 4, componente 2 Investimento 1.1- Avviso 104/2022 | PINC, Pangenome INformatiCs: from Theory to Applications
Year: 2022
Call: Bando PRIN 2022
Grantors: MINISTERO DELL'UNIVERSITA' E DELLA RICERCA (MUR)
ALPACA-ALgorithms for PAngenome Computational Analysis
Year: 2020
Call: Innovative Training Networks
Grantors: EUROPEAN COMMISSION
PANGAIA - Pan-genome Graph Algorithms and Data Integration
Year: 2019
Call: Research and Innovation Staff Exchange
Grantors: EUROPEAN COMMISSION
Modulation of anti-cancer immune response by regulatory non-coding RNAs
Year: 2013
Call: 2013-007 - Ricerca Scientifica in ambito biomedico, Ricerca scientifica in ambito biomedico
Grantors: FONDAZIONE CARIPLO

Awards

Editorial boards

  • Direttore di rivista, collana editoriale, enciclopedia - THEORY AND APPLICATIONS OF COMPUTABILITY, 2010

Research and teaching assignments

  • Visiting Researcher - ricercatore - University of Colorado Boulder, 1994
  • Visiting Researcher - ricercatore - University of Colorado Boulder, 1991 - 1992
  • Visiting Researcher - ricercatore - University of California at Davis, 1998
  • Visiting Researcher - ricercatore - McMaster University, 1997

Congresses/Conferences

  • Program chair - CiE2013. The Nature of Computation, 2013