BONIZZONI PAOLA

Role
Full Professor  
Academic disciplines
Informatics (INFO-01/A)
Scientific-Disciplinary Group:
INFORMATICS (01/INFO-01)
Office phone
Room:
  • U14, Floor: 2, Room: 2040

Publications

  • Avila Cartes, J., Bonizzoni, P., Ciccolella, S., Della Vedova, G., Denti, L. (2024). PangeBlocks: customized construction of pangenome graphs via maximal blocks. BMC BIOINFORMATICS, 25(1) [10.1186/s12859-024-05958-5]. Detail

  • Bonizzoni, P., Boucher, C., Cozzi, D., Gagie, T., Pirola, Y. (2024). Solving the Minimal Positional Substring Cover Problem in Sublinear Space. In 35th Annual Symposium on Combinatorial Pattern Matching, CPM 2024. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing [10.4230/LIPIcs.CPM.2024.12]. Detail

  • Bonizzoni, P., De Felice, C., Riccardi, B., Zaccagnino, R., Zizza, R. (2024). Unveiling the Connection Between the Lyndon Factorization and the Canonical Inverse Lyndon Factorization via a Border Property. In 49th International Symposium on Mathematical Foundations of Computer Science, MFCS 2024. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing [10.4230/LIPIcs.MFCS.2024.31]. Detail

  • Avila Cartes, J., Bonizzoni, P., Ciccolella, S., Della Vedova, G., Denti, L., Didelot, X., et al. (2024). RecGraph: recombination-aware alignment of sequences to variation graphs. BIOINFORMATICS, 40(5) [10.1093/bioinformatics/btae292]. Detail

  • Bonizzoni, P., De Felice, C., Pirola, Y., Rizzi, R., Zaccagnino, R., Zizza, R. (2023). Identification of Chimeric RNAs: a novel machine learning perspective. Intervento presentato a: The 12th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS 2023) -
    December 11th to 13th 2023, Oklahoma, USA.
     Detail

Research projects

Forgenom
Year: 2022
Call: FAQC 2022 - seconda finestra
Grantors: Università degli Studi di MILANO-BICOCCA
PNRR per la Missione 4, componente 2 Investimento 1.1- Avviso 104/2022 | PINC, Pangenome INformatiCs: from Theory to Applications
Year: 2022
Call: Bando PRIN 2022
Grantors: MINISTERO DELL'UNIVERSITA' E DELLA RICERCA (MUR)
ALPACA-ALgorithms for PAngenome Computational Analysis
Year: 2020
Call: Innovative Training Networks
Grantors: EUROPEAN COMMISSION
PANGAIA - Pan-genome Graph Algorithms and Data Integration
Year: 2019
Call: Research and Innovation Staff Exchange
Grantors: EUROPEAN COMMISSION
Modulation of anti-cancer immune response by regulatory non-coding RNAs
Year: 2013
Call: 2013-007 - Ricerca Scientifica in ambito biomedico, Ricerca scientifica in ambito biomedico
Grantors: FONDAZIONE CARIPLO

Awards

Editorial boards

  • Direttore di rivista, collana editoriale, enciclopedia - THEORY AND APPLICATIONS OF COMPUTABILITY, 2010

Research and teaching assignments

  • Visiting Researcher - ricercatore - University of Colorado Boulder, 1994
  • Visiting Researcher - ricercatore - University of Colorado Boulder, 1991 - 1992
  • Visiting Researcher - ricercatore - University of California at Davis, 1998
  • Visiting Researcher - ricercatore - McMaster University, 1997

Congresses/Conferences

  • Program chair - CiE2013. The Nature of Computation, 2013