BONIZZONI PAOLA

Role
Full Professor  
Academic disciplines
Informatics (INFO-01/A)
Office phone
Room:
  • U14, Floor: 2, Room: 2040

Publications

  • Bonizzoni, P., Boucher, C., Cozzi, D., Gagie, T., Pirola, Y. (2024). Solving the Minimal Positional Substring Cover Problem in Sublinear Space. In 35th Annual Symposium on Combinatorial Pattern Matching, CPM 2024 [10.4230/LIPIcs.CPM.2024.12]. Detail

  • Avila Cartes, J., Bonizzoni, P., Ciccolella, S., Della Vedova, G., Denti, L., Didelot, X., et al. (2024). RecGraph: recombination-aware alignment of sequences to variation graphs. BIOINFORMATICS, 40(5) [10.1093/bioinformatics/btae292]. Detail

  • Denti, L., Khorsand, P., Bonizzoni, P., Hormozdiari, F., Chikhi, R. (2023). SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads. NATURE METHODS, 20(4), 550-558 [10.1038/s41592-022-01674-1]. Detail

  • Avila Cartes, J., Anand, S., Ciccolella, S., Bonizzoni, P., Della Vedova, G. (2023). Accurate and fast clade assignment via deep learning and frequency chaos game representation. GIGASCIENCE, 12 [10.1093/gigascience/giac119]. Detail

  • Cozzi, D., Bonizzoni, P., Denti, L. (2023). ESGq: Alternative Splicing events quantification across conditions based on Event Splicing Graphs. In Proceedings of the 23rd Conference Information Technologies – Applications and Theory (ITAT 2023) (pp.242-249). CEUR-WS. Detail

Research projects

Forgenom
Year: 2022
Call: FAQC 2022 - seconda finestra
Grantors: Università degli Studi di MILANO-BICOCCA
PNRR per la Missione 4, componente 2 Investimento 1.1- Avviso 104/2022 | PINC, Pangenome INformatiCs: from Theory to Applications
Year: 2022
Call: Bando PRIN 2022
Grantors: MINISTERO DELL'UNIVERSITA' E DELLA RICERCA (MUR)
ALPACA-ALgorithms for PAngenome Computational Analysis
Year: 2020
Call: Innovative Training Networks
Grantors: EUROPEAN COMMISSION
PANGAIA - Pan-genome Graph Algorithms and Data Integration
Year: 2019
Call: Research and Innovation Staff Exchange
Grantors: EUROPEAN COMMISSION
Modulation of anti-cancer immune response by regulatory non-coding RNAs
Year: 2013
Call: 2013-007 - Ricerca Scientifica in ambito biomedico, Ricerca scientifica in ambito biomedico
Grantors: FONDAZIONE CARIPLO

Awards

Editorial boards

  • Direttore di rivista, collana editoriale, enciclopedia - THEORY AND APPLICATIONS OF COMPUTABILITY, 2010

Research and teaching assignments

  • Visiting Researcher - ricercatore - University of Colorado Boulder, 1994
  • Visiting Researcher - ricercatore - University of Colorado Boulder, 1991 - 1992
  • Visiting Researcher - ricercatore - University of California at Davis, 1998
  • Visiting Researcher - ricercatore - McMaster University, 1997

Congresses/Conferences

  • Program chair - CiE2013. The Nature of Computation, 2013